Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM40_5331Mce related family protein. (531 aa)    
Predicted Functional Partners:
DM40_5330
pqiA_fam: integral membrane, PqiA family protein.
 
 
 0.957
DM40_5332
Hypothetical protein.
 
   
 0.942
DM40_1404
Paraquat-inducible A family protein.
 
 0.903
DM40_1405
Paraquat-inducible A family protein.
 
 
 0.895
DM40_5350
Paraquat-inducible A family protein.
 
 
 0.885
DM40_1402
Hypothetical protein.
 
   
 0.814
DM40_5348
Hypothetical protein.
 
   
 0.534
DM40_5327
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.414
DM40_5328
acrB/AcrD/AcrF family protein.
       0.414
DM40_5329
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
       0.414
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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