STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5334ACT domain protein. (561 aa)    
Predicted Functional Partners:
mhpB
2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase.
 
 
 0.932
DM40_1483
FAD binding domain protein.
  
  
 
0.926
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
  
  
 
0.920
DM40_5335
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
   
 0.854
DM40_5336
Fumarylacetoacetate (FAA) hydrolase family protein.
  
    0.643
DM40_5337
AMP-binding enzyme family protein.
       0.638
DM40_4611
FAD binding domain protein.
  
   
 0.624
DM40_4874
Cytochrome P450 family protein.
   
 
 0.565
DM40_5855
FAD binding domain protein.
  
   
 0.539
DM40_5333
Bacterial regulatory s, tetR family protein.
       0.529
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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