Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_5338Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein. (248 aa)    
Predicted Functional Partners:
hemN
hemN: oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.751
DM40_5339
Bacterial regulatory s, tetR family protein.
       0.550
DM40_5340
Response regulator.
       0.479
DM40_5336
Fumarylacetoacetate (FAA) hydrolase family protein.
       0.447
DM40_5337
AMP-binding enzyme family protein.
       0.447
ppk2
PPK2_P_aer: polyphosphate kinase 2.
   
    0.441
DM40_707
Polyphosphate kinase 2 family protein.
   
    0.441
DM40_4226
Polysaccharide biosynthesis family protein.
  
     0.402
DM40_2395
Hypothetical protein.
  
     0.400
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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