STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5373Hypothetical protein. (204 aa)    
Predicted Functional Partners:
DM40_5374
FAD binding domain of DNA photolyase family protein.
       0.590
DM40_5356
Hypothetical protein.
 
   
 0.557
DM40_5352
3-oxo-5-alpha-steroid 4-dehydrogenase family protein.
 
     0.548
DM40_5355
FAD dependent oxidoreductase family protein.
 
   
 0.527
DM40_5354
Lipocalin-like domain protein.
 
     0.453
DM40_5353
Methyltransferase domain protein.
 
     0.448
srkA
Phosphotransferase enzyme family protein; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
  
     0.420
DM40_4166
2OG-Fe(II) oxygenase superfamily protein.
  
     0.415
DM40_1833
Alpha/beta hydrolase fold family protein.
  
     0.413
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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