Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DM40_5382Putative membrane protein. (144 aa)    
Predicted Functional Partners:
DM40_3884
Rhodanese-like domain protein.
   
 
  0.900
DM40_5383
efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily protein.
       0.773
DM40_5385
AMP-binding enzyme family protein.
 
    0.661
DM40_5384
Thermostable hemolysin family protein.
       0.601
DM40_5386
Taurine catabolism dioxygenase TauD, TfdA family protein.
       0.581
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
   
  0.523
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.470
DM40_273
R_switched_YjbE: integral membrane, YjbE family protein.
  
     0.446
DM40_5380
acrB/AcrD/AcrF family protein.
       0.445
DM40_5381
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.445
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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