STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5415ANTAR domain protein. (451 aa)    
Predicted Functional Partners:
urtA
Periplasmic binding domain protein.
 
 
 0.585
DM40_5715
Aminotransferase class-V family protein.
  
     0.581
DM40_5414
Formate/nitrite transporter family protein.
 
   
 0.562
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.533
DM40_3538
Response regulator.
  
  
  0.533
DM40_115
Receptor ligand binding region family protein.
  
   0.504
DM40_134
Putative extracellular ligand-binding receptor.
  
   0.504
DM40_1830
Receptor ligand binding region family protein.
  
   0.504
DM40_2906
Periplasmic binding domain protein.
  
   0.504
DM40_3158
Receptor ligand binding region family protein.
  
   0.504
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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