STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5458parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family. (341 aa)    
Predicted Functional Partners:
DM40_5459
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.957
DM40_872
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.872
soj_1
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.751
DM40_2978
ftsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.734
DM40_1627
ftsK/SpoIIIE family protein.
  
   
 0.713
DM40_376
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.660
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.590
DM40_80
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
  
 
 0.564
yhjQ
cellulose_yhjQ: cellulose synthase operon protein YhjQ.
  
 
 0.556
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.517
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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