STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eutDectoine_eutD: ectoine utilization protein EutD. (402 aa)    
Predicted Functional Partners:
eutE
ectoine_eutE: ectoine utilization protein EutE.
 
  
 0.984
eutC
ectoine_eutC: ectoine utilization protein EutC.
 
     0.930
eutB
ectoine_eutB: ectoine utilization protein EutB.
 
  
 0.864
DM40_4449
Succinylglutamate desuccinylase / Aspartoacylase family protein.
 
  
 0.830
DM40_5479
asnC family protein.
 
 
   0.830
DM40_5481
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.767
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
 0.740
DM40_5474
Aminotransferase class I and II family protein.
 
     0.626
DM40_3052
Sarcosine oxidase, gamma subunit.
  
  
  0.591
soxD
Subunit delta of sarcosine oxidase.
  
  
  0.548
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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