STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_548tonB-siderophor: TonB-dependent siderophore receptor family protein. (733 aa)    
Predicted Functional Partners:
DM40_4779
2OG-Fe(II) oxygenase superfamily protein.
 
  
 0.951
DM40_1458
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
    0.778
DM40_4041
hrcV: type III secretion, HrcV family protein.
   
    0.523
DM40_4820
hrcV: type III secretion, HrcV family protein.
   
    0.523
DM40_4463
tonB dependent receptor family protein.
  
   
 0.501
DM40_549
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
       0.494
DM40_2852
Iron permease FTR1 family protein.
   
    0.473
DM40_584
Iron permease FTR1 family protein.
   
    0.473
DM40_3519
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
   
    0.455
DM40_3724
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
   
    0.455
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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