STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_548tonB-siderophor: TonB-dependent siderophore receptor family protein. (733 aa)    
Predicted Functional Partners:
DM40_4779
2OG-Fe(II) oxygenase superfamily protein.
 
  
 0.948
DM40_4463
tonB dependent receptor family protein.
  
   
 0.508
DM40_549
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
       0.494
DM40_2852
Iron permease FTR1 family protein.
   
  
 0.491
DM40_584
Iron permease FTR1 family protein.
   
  
 0.491
DM40_5030
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
0.449
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
   
  
 0.443
DM40_2277
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
0.443
DM40_1668
tonB dependent receptor family protein.
 
  
0.424
DM40_2274
AA-adenyl-dom: amino acid adenylation domain protein.
   
  
 0.419
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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