STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5511mmgE/PrpD family protein. (479 aa)    
Predicted Functional Partners:
DM40_5517
mmgE/PrpD family protein.
 
     0.804
DM40_5560
mmgE/PrpD family protein.
  
     0.774
DM40_5510
Aldehyde dehydrogenase family protein.
  
    0.687
DM40_2314
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
  
 0.662
DM40_5531
hpcH/HpaI aldolase/citrate lyase family protein.
 
  
 0.626
DM40_5542
asp/Glu/Hydantoin racemase family protein.
  
     0.616
DM40_5518
hpcH/HpaI aldolase/citrate lyase family protein.
 
  
 0.594
DM40_3647
Phosphoenolpyruvate phosphomutase family protein.
 
  
 0.573
DM40_4876
Phosphoenolpyruvate phosphomutase family protein.
  
  
 0.564
DM40_5509
Short chain dehydrogenase family protein.
       0.553
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.