STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5518hpcH/HpaI aldolase/citrate lyase family protein. (285 aa)    
Predicted Functional Partners:
DM40_5531
hpcH/HpaI aldolase/citrate lyase family protein.
  
  
 
0.926
DM40_3938
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.904
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
  
  
 0.849
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.836
DM40_5519
coA-transferase III family protein.
 
    0.832
DM40_5520
Hypothetical protein; N-terminal half of MaoC dehydratase family protein.
 
  
 0.790
DM40_5517
mmgE/PrpD family protein.
 
  
 0.656
DM40_5516
mmgE/PrpD family protein.
 
  
 0.623
DM40_2314
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
  
  
 0.606
DM40_5560
mmgE/PrpD family protein.
 
  
 0.600
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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