STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5533Hypothetical protein. (304 aa)    
Predicted Functional Partners:
DM40_4116
phospholipase/Carboxylesterase family protein.
     
 0.855
DM40_4407
Putative phosphofructokinase pfkB.
   
    0.493
DM40_3974
Glycosyl transferases group 1 family protein.
  
 
   0.492
DM40_932
Glycosyl transferases group 1 family protein.
  
 
   0.477
DM40_1555
Glycosyl transferases group 1 family protein.
  
 
   0.472
DM40_5532
Bacterial regulatory s, tetR family protein.
       0.464
fbp
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family.
    
  0.416
DM40_1541
Glycosyl transferases group 1 family protein.
    
   0.404
DM40_1546
Glycosyl transferases group 1 family protein.
    
   0.404
DM40_1547
Hypothetical protein.
    
   0.404
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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