STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5565Putative gamma-carboxymuconolactone decarboxylase subunit. (246 aa)    
Predicted Functional Partners:
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.743
DM40_2209
Acyltransferase family protein.
  
     0.658
DM40_5335
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
  
     0.635
DM40_5257
Hypothetical protein.
  
     0.554
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
     
  0.531
DM40_5830
FAD binding domain protein.
 
   
 0.480
DM40_1827
Hypothetical protein.
  
     0.454
DM40_5235
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
     0.453
DM40_4057
Iron-containing alcohol dehydrogenase.
 
  
  0.451
DM40_5599
Tannase and feruloyl esterase family protein.
 
  
  0.450
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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