Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_5595Cupin domain protein. (345 aa)    
Predicted Functional Partners:
DM40_3805
Helix-turn-helix domain protein.
  
   0.736
DM40_5811
Helix-turn-helix domain protein.
  
     0.720
DM40_5029
Helix-turn-helix domain protein.
  
     0.711
DM40_5754
Helix-turn-helix domain protein.
  
   0.707
DM40_5680
Helix-turn-helix domain protein.
  
   0.706
DM40_5596
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.683
DM40_3848
Helix-turn-helix domain protein.
  
     0.638
DM40_2500
Helix-turn-helix domain protein.
  
     0.598
DM40_1758
Helix-turn-helix domain protein.
  
     0.594
DM40_5416
Helix-turn-helix domain protein.
  
     0.575
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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