STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpI-24-oxalocrotonate tautomerase domain protein. (124 aa)    
Predicted Functional Partners:
DM40_5605
Ring hydroxylating beta subunit.
 
     0.822
DM40_5606
Ring hydroxylating alpha subunit family protein.
 
     0.791
DM40_5603
Putative iacB.
 
     0.702
DM40_5602
snoaL-like domain protein.
 
     0.666
DM40_4538
CAAX protease self-immunity family protein.
  
     0.630
mhpD
2-keto-4-pentenoate hydratase.
 
  
 0.599
DM40_5268
Fumarylacetoacetate (FAA) hydrolase family protein.
 
  
 0.598
dmpI
Taut: 4-oxalocrotonate tautomerase enzyme family protein.
  
  
  0.587
DM40_5001
ac_ald_DH_ac: acetaldehyde dehydrogenase.
 
   
 0.573
DM40_5601
Amidase family protein.
       0.565
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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