STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5635Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein. (141 aa)    
Predicted Functional Partners:
DM40_5636
Alpha/beta hydrolase fold family protein.
       0.604
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.599
ohrR
Transcriptional regulator OhrR.
  
 0.558
DM40_1420
Ferritin-like domain protein; Belongs to the Dps family.
  
  
 0.556
DM40_2247
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.434
DM40_2325
hxlR-like helix-turn-helix family protein.
 
  
 0.430
DM40_5634
Bacterial regulatory s, tetR family protein.
       0.429
DM40_1884
penta_MxKDx: pentapeptide MXKDX repeat family protein.
   
    0.410
DM40_2217
GGDEF: diguanylate cyclase domain protein.
   
    0.410
DM40_3600
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.410
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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