STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_564Alpha/beta hydrolase fold family protein. (298 aa)    
Predicted Functional Partners:
dehII
HAD_type_II: haloacid dehalogenase, type II.
  
 
 0.971
DM40_1222
HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein.
  
 
 0.954
DM40_52
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
  
  0.952
dehII-2
HAD_type_II: haloacid dehalogenase, type II.
   
 
 0.904
apaH
apaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.685
DM40_3421
TTC: tartrate dehydrogenase.
  
 0.573
DM40_5523
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
  0.572
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.536
pheA
CM_P2: chorismate mutase.
     
 0.533
uca
Urea_carbox: urea carboxylase.
  
 
 0.530
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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