STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5857Hypothetical protein. (90 aa)    
Predicted Functional Partners:
DM40_5858
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
     0.874
DM40_1320
Hypothetical protein.
   
 0.859
DM40_3791
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
 
     0.604
actP-2
Sss: transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.558
DM40_3627
Serine hydrolase family protein.
  
     0.492
DM40_5853
Amidohydrolase family protein.
  
    0.484
DM40_5855
FAD binding domain protein.
       0.480
DM40_5856
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
       0.480
DM40_386
trkA-N domain protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.479
DM40_2015
A_cpa1: Na+/H+ antiporter.
 
     0.473
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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