STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmCABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (235 aa)    
Predicted Functional Partners:
OEY87105.1
Cytochrome c biogenesis protein CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OEY86571.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OEY86362.1
Heme ABC exporter, ATP-binding protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OEY87156.1
Cytochrome C biogenesis protein CycK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.889
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
  
 0.861
OEY87054.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.651
OEY86991.1
Cytochrome C biogenesis protein CcmH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.646
OEY86360.1
Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.645
OEY86928.1
Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.543
OEY86947.1
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.534
Your Current Organism:
Wolbachia pipientis
NCBI taxonomy Id: 955
Other names: W. pipientis
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