STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMIGD2Transmembrane and immunoglobulin domain containing 2. (275 aa)    
Predicted Functional Partners:
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
 0.936
ENSPANP00000035299
Sm domain-containing protein.
   
 0.935
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.912
SF3B2
Splicing factor 3b subunit 2.
   
 0.903
SF3B4
Splicing factor 3b subunit 4.
    
 0.900
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.898
PRPF8
Pre-mRNA processing factor 8.
   
 0.896
SF3B3
Splicing factor 3b subunit 3.
    
 0.894
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
  0.893
DDX46
DEAD-box helicase 46.
    
 0.889
Your Current Organism:
Papio anubis
NCBI taxonomy Id: 9555
Other names: Anubis baboon, Doguera baboon, Kenya baboon, P. anubis, Papio cynocephalus anubis, Papio doguera, Papio hamadryas anubis, Papio hamadryas doguera, baboon, olive baboon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.