Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BUD31 | DDX23 | ENSPANP00000006945 | ENSPANP00000002455 | BUD31 homolog. | DEAD-box helicase 23. | 0.407 |
BUD31 | EFTUD2 | ENSPANP00000006945 | ENSPANP00000020816 | BUD31 homolog. | Elongation factor Tu GTP binding domain containing 2. | 0.984 |
BUD31 | ENSPANP00000035299 | ENSPANP00000006945 | ENSPANP00000035299 | BUD31 homolog. | Sm domain-containing protein. | 0.967 |
BUD31 | PRPF6 | ENSPANP00000006945 | ENSPANP00000014391 | BUD31 homolog. | Pre-mRNA processing factor 6. | 0.424 |
BUD31 | PRPF8 | ENSPANP00000006945 | ENSPANP00000019479 | BUD31 homolog. | Pre-mRNA processing factor 8. | 0.981 |
BUD31 | SNRNP200 | ENSPANP00000006945 | ENSPANP00000010937 | BUD31 homolog. | Small nuclear ribonucleoprotein U5 subunit 200. | 0.969 |
BUD31 | SNRNP40 | ENSPANP00000006945 | ENSPANP00000004526 | BUD31 homolog. | Small nuclear ribonucleoprotein U5 subunit 40. | 0.921 |
BUD31 | SNRPB | ENSPANP00000006945 | ENSPANP00000027149 | BUD31 homolog. | Small nuclear ribonucleoprotein-associated protein. | 0.865 |
BUD31 | SNRPD1 | ENSPANP00000006945 | ENSPANP00000002702 | BUD31 homolog. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.949 |
BUD31 | SNRPD2 | ENSPANP00000006945 | ENSPANP00000006048 | BUD31 homolog. | Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.937 |
DDX23 | BUD31 | ENSPANP00000002455 | ENSPANP00000006945 | DEAD-box helicase 23. | BUD31 homolog. | 0.407 |
DDX23 | EFTUD2 | ENSPANP00000002455 | ENSPANP00000020816 | DEAD-box helicase 23. | Elongation factor Tu GTP binding domain containing 2. | 0.975 |
DDX23 | ENSPANP00000035299 | ENSPANP00000002455 | ENSPANP00000035299 | DEAD-box helicase 23. | Sm domain-containing protein. | 0.926 |
DDX23 | PRPF6 | ENSPANP00000002455 | ENSPANP00000014391 | DEAD-box helicase 23. | Pre-mRNA processing factor 6. | 0.981 |
DDX23 | PRPF8 | ENSPANP00000002455 | ENSPANP00000019479 | DEAD-box helicase 23. | Pre-mRNA processing factor 8. | 0.978 |
DDX23 | SNRNP200 | ENSPANP00000002455 | ENSPANP00000010937 | DEAD-box helicase 23. | Small nuclear ribonucleoprotein U5 subunit 200. | 0.972 |
DDX23 | SNRNP40 | ENSPANP00000002455 | ENSPANP00000004526 | DEAD-box helicase 23. | Small nuclear ribonucleoprotein U5 subunit 40. | 0.942 |
DDX23 | SNRPB | ENSPANP00000002455 | ENSPANP00000027149 | DEAD-box helicase 23. | Small nuclear ribonucleoprotein-associated protein. | 0.914 |
DDX23 | SNRPD1 | ENSPANP00000002455 | ENSPANP00000002702 | DEAD-box helicase 23. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.938 |
DDX23 | SNRPD2 | ENSPANP00000002455 | ENSPANP00000006048 | DEAD-box helicase 23. | Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.941 |
page 1 of 6