Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPHPeripherin. (470 aa)    
Predicted Functional Partners:
NEFM
Neurofilament medium.
   
 
0.955
DES
Desmin.
   
   0.950
NEFL
Neurofilament light.
   
 
0.934
NEFH
Neurofilament heavy.
   
 
0.920
VIM
Vimentin.
   
   0.916
NES
Nestin.
    
   0.811
ENSTGEP00000010570
annotation not available
   
   0.688
INA
Internexin neuronal intermediate filament protein alpha.
   
   0.688
PARP11
poly(ADP-ribose) polymerase family member 11.
      
 0.467
Your Current Organism:
Theropithecus gelada
NCBI taxonomy Id: 9565
Other names: T. gelada, bleeding heart baboon, gelada, gelada baboon
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