STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV-1 Tat specific factor 1. (754 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
    
 
 0.966
DDX46
DEAD-box helicase 46.
   
 0.952
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.938
SF3A2
Splicing factor 3a subunit 2.
   
 
 0.924
SF3B2
Splicing factor 3b subunit 2.
   
 
 0.919
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.912
SF3B3
Splicing factor 3b subunit 3.
    
 
 0.880
SF3A1
Splicing factor 3a subunit 1.
    
 
 0.874
PHF5A
PHD finger protein 5A.
    
 
 0.864
SNRPB2
Small nuclear ribonucleoprotein polypeptide B2.
    
 
 0.852
Your Current Organism:
Theropithecus gelada
NCBI taxonomy Id: 9565
Other names: T. gelada, bleeding heart baboon, gelada, gelada baboon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.