FAM98C protein (Theropithecus gelada) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM98C

Family with sequence similarity 98 member C. (345 aa)

Predicted Functional Partners:

RTRAF

0.839

DDX1

0.769

SLFNL1

0.769

NUFIP2

0.525

Your Current Organism:

Theropithecus gelada

NCBI taxonomy Id: 9565
Other names: T. gelada, bleeding heart baboon, gelada, gelada baboon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX1	FAM98C	ENSTGEP00000021298	ENSTGEP00000006495	DEAD-box helicase 1.	Family with sequence similarity 98 member C.	0.769
DDX1	RTRAF	ENSTGEP00000021298	ENSTGEP00000011284	DEAD-box helicase 1.	RNA transcription, translation and transport factor.	0.972
FAM98C	DDX1	ENSTGEP00000006495	ENSTGEP00000021298	Family with sequence similarity 98 member C.	DEAD-box helicase 1.	0.769
FAM98C	NUFIP2	ENSTGEP00000006495	ENSTGEP00000012694	Family with sequence similarity 98 member C.	Nuclear FMR1 interacting protein 2.	0.525
FAM98C	RTRAF	ENSTGEP00000006495	ENSTGEP00000011284	Family with sequence similarity 98 member C.	RNA transcription, translation and transport factor.	0.839
FAM98C	SLFNL1	ENSTGEP00000006495	ENSTGEP00000030560	Family with sequence similarity 98 member C.	Schlafen like 1.	0.769
NUFIP2	FAM98C	ENSTGEP00000012694	ENSTGEP00000006495	Nuclear FMR1 interacting protein 2.	Family with sequence similarity 98 member C.	0.525
RTRAF	DDX1	ENSTGEP00000011284	ENSTGEP00000021298	RNA transcription, translation and transport factor.	DEAD-box helicase 1.	0.972
RTRAF	FAM98C	ENSTGEP00000011284	ENSTGEP00000006495	RNA transcription, translation and transport factor.	Family with sequence similarity 98 member C.	0.839
RTRAF	SLFNL1	ENSTGEP00000011284	ENSTGEP00000030560	RNA transcription, translation and transport factor.	Schlafen like 1.	0.925
SLFNL1	FAM98C	ENSTGEP00000030560	ENSTGEP00000006495	Schlafen like 1.	Family with sequence similarity 98 member C.	0.769
SLFNL1	RTRAF	ENSTGEP00000030560	ENSTGEP00000011284	Schlafen like 1.	RNA transcription, translation and transport factor.	0.925