PSPC1 protein (Theropithecus gelada) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSPC1

Paraspeckle component 1. (523 aa)

Predicted Functional Partners:

NONO

0.955

SFPQ

0.943

RBM14

0.617

HNRNPM

0.611

ENSTGEP00000028217

0.611

HNRNPK

0.611

STAB2

0.551

ZMYM5

0.548

TSG101

0.527

FUS

0.525

Your Current Organism:

Theropithecus gelada

NCBI taxonomy Id: 9565
Other names: T. gelada, bleeding heart baboon, gelada, gelada baboon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTGEP00000028217	FUS	ENSTGEP00000028217	ENSTGEP00000012412	annotation not available	FUS RNA binding protein.	0.696
ENSTGEP00000028217	HNRNPM	ENSTGEP00000028217	ENSTGEP00000027913	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.975
ENSTGEP00000028217	PSPC1	ENSTGEP00000028217	ENSTGEP00000021779	annotation not available	Paraspeckle component 1.	0.611
ENSTGEP00000028217	RBM14	ENSTGEP00000028217	ENSTGEP00000006907	annotation not available	RNA binding motif protein 14.	0.708
ENSTGEP00000028217	SFPQ	ENSTGEP00000028217	ENSTGEP00000022580	annotation not available	Splicing factor proline and glutamine rich.	0.705
FUS	ENSTGEP00000028217	ENSTGEP00000012412	ENSTGEP00000028217	FUS RNA binding protein.	annotation not available	0.696
FUS	HNRNPK	ENSTGEP00000012412	ENSTGEP00000035839	FUS RNA binding protein.	Heterogeneous nuclear ribonucleoprotein K.	0.696
FUS	HNRNPM	ENSTGEP00000012412	ENSTGEP00000027913	FUS RNA binding protein.	Heterogeneous nuclear ribonucleoprotein M.	0.753
FUS	NONO	ENSTGEP00000012412	ENSTGEP00000007087	FUS RNA binding protein.	non-POU domain containing octamer binding.	0.575
FUS	PSPC1	ENSTGEP00000012412	ENSTGEP00000021779	FUS RNA binding protein.	Paraspeckle component 1.	0.525
FUS	RBM14	ENSTGEP00000012412	ENSTGEP00000006907	FUS RNA binding protein.	RNA binding motif protein 14.	0.515
FUS	SFPQ	ENSTGEP00000012412	ENSTGEP00000022580	FUS RNA binding protein.	Splicing factor proline and glutamine rich.	0.692
HNRNPK	FUS	ENSTGEP00000035839	ENSTGEP00000012412	Heterogeneous nuclear ribonucleoprotein K.	FUS RNA binding protein.	0.696
HNRNPK	HNRNPM	ENSTGEP00000035839	ENSTGEP00000027913	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein M.	0.975
HNRNPK	PSPC1	ENSTGEP00000035839	ENSTGEP00000021779	Heterogeneous nuclear ribonucleoprotein K.	Paraspeckle component 1.	0.611
HNRNPK	RBM14	ENSTGEP00000035839	ENSTGEP00000006907	Heterogeneous nuclear ribonucleoprotein K.	RNA binding motif protein 14.	0.708
HNRNPK	SFPQ	ENSTGEP00000035839	ENSTGEP00000022580	Heterogeneous nuclear ribonucleoprotein K.	Splicing factor proline and glutamine rich.	0.705
HNRNPM	ENSTGEP00000028217	ENSTGEP00000027913	ENSTGEP00000028217	Heterogeneous nuclear ribonucleoprotein M.	annotation not available	0.975
HNRNPM	FUS	ENSTGEP00000027913	ENSTGEP00000012412	Heterogeneous nuclear ribonucleoprotein M.	FUS RNA binding protein.	0.753
HNRNPM	HNRNPK	ENSTGEP00000027913	ENSTGEP00000035839	Heterogeneous nuclear ribonucleoprotein M.	Heterogeneous nuclear ribonucleoprotein K.	0.975