STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC70447.1UPF0042 nucleotide-binding protein. (289 aa)    
Predicted Functional Partners:
SDC70422.1
Conserved hypothetical protein, cofD-related.
  
  
 0.975
SDC70404.1
Hypothetical protein.
 
  
 0.933
SDC40410.1
Ribonuclease G.
 
 
 
 0.888
SDC70376.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
  
  
 0.840
SDC47528.1
Nitrogen regulatory protein P-II.
  
  
 0.743
SDC70586.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
    
 0.643
SDC16185.1
Pyruvate kinase.
    
 0.609
SDC70470.1
Putative hydrolase.
       0.589
SDC83752.1
Putative sigma-54 modulation protein.
 
  
 0.562
SDC66311.1
UDP-N-acetylglucosamine pyrophosphorylase.
 
  
 0.526
Your Current Organism:
Fuchsiella alkaliacetigena
NCBI taxonomy Id: 957042
Other names: DSM 24880, F. alkaliacetigena, Fuchsiella alkaliacetigena Zhilina et al. 2012, Halobacteroidaceae bacterium Z-7100, VKM B-2667, strain Z-7100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.