Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYPSynaptophysin. (313 aa)    
Predicted Functional Partners:
VAMP2
V-SNARE coiled-coil homology domain-containing protein.
   
 0.969
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.945
SYN1
Synapsin I.
   
 
 0.939
PLP1
Proteolipid protein 1.
   
 
 0.874
SYT1
Synaptotagmin 1.
   
 
 0.861
RAB3A
RAB3A, member RAS oncogene family.
   
 0.830
STX1B
Syntaxin 1B; Belongs to the syntaxin family.
   
 0.827
PACSIN1
Protein kinase C and casein kinase substrate in neurons 1.
   
  
 0.795
SYN2
Synapsin II.
   
 
 0.792
GPM6A
Glycoprotein M6A.
   
 
 0.780
Your Current Organism:
Gorilla gorilla
NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla
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