ENSGGOP00000049868 protein (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGGOP00000049868

PDZ and LIM domain 3. (364 aa)

Predicted Functional Partners:

ACTN2

0.751

SCN8A

0.672

SMTNL1

0.645

EHBP1L1

0.635

EHBP1

0.635

TTN

0.610

ENSGGOP00000047862

0.599

PDLIM4

0.598

SMTN

0.595

PDLIM5

0.575

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN2	ENSGGOP00000047862	ENSGGOP00000011629	ENSGGOP00000047862	Actinin alpha 2.	PDZ and LIM domain 7.	0.413
ACTN2	ENSGGOP00000049868	ENSGGOP00000011629	ENSGGOP00000049868	Actinin alpha 2.	PDZ and LIM domain 3.	0.751
ACTN2	PDLIM4	ENSGGOP00000011629	ENSGGOP00000010162	Actinin alpha 2.	PDZ and LIM domain 4.	0.435
ACTN2	PDLIM5	ENSGGOP00000011629	ENSGGOP00000035038	Actinin alpha 2.	PDZ and LIM domain 5.	0.614
ACTN2	TTN	ENSGGOP00000011629	ENSGGOP00000029524	Actinin alpha 2.	Titin.	0.992
EHBP1	EHBP1L1	ENSGGOP00000028701	ENSGGOP00000011472	EH domain binding protein 1.	EH domain binding protein 1 like 1.	0.570
EHBP1	ENSGGOP00000047862	ENSGGOP00000028701	ENSGGOP00000047862	EH domain binding protein 1.	PDZ and LIM domain 7.	0.635
EHBP1	ENSGGOP00000049868	ENSGGOP00000028701	ENSGGOP00000049868	EH domain binding protein 1.	PDZ and LIM domain 3.	0.635
EHBP1	PDLIM4	ENSGGOP00000028701	ENSGGOP00000010162	EH domain binding protein 1.	PDZ and LIM domain 4.	0.635
EHBP1	PDLIM5	ENSGGOP00000028701	ENSGGOP00000035038	EH domain binding protein 1.	PDZ and LIM domain 5.	0.666
EHBP1	SMTN	ENSGGOP00000028701	ENSGGOP00000020921	EH domain binding protein 1.	Smoothelin.	0.570
EHBP1	SMTNL1	ENSGGOP00000028701	ENSGGOP00000017499	EH domain binding protein 1.	Smoothelin like 1.	0.570
EHBP1L1	EHBP1	ENSGGOP00000011472	ENSGGOP00000028701	EH domain binding protein 1 like 1.	EH domain binding protein 1.	0.570
EHBP1L1	ENSGGOP00000047862	ENSGGOP00000011472	ENSGGOP00000047862	EH domain binding protein 1 like 1.	PDZ and LIM domain 7.	0.635
EHBP1L1	ENSGGOP00000049868	ENSGGOP00000011472	ENSGGOP00000049868	EH domain binding protein 1 like 1.	PDZ and LIM domain 3.	0.635
EHBP1L1	PDLIM4	ENSGGOP00000011472	ENSGGOP00000010162	EH domain binding protein 1 like 1.	PDZ and LIM domain 4.	0.635
EHBP1L1	PDLIM5	ENSGGOP00000011472	ENSGGOP00000035038	EH domain binding protein 1 like 1.	PDZ and LIM domain 5.	0.635
EHBP1L1	SMTN	ENSGGOP00000011472	ENSGGOP00000020921	EH domain binding protein 1 like 1.	Smoothelin.	0.570
EHBP1L1	SMTNL1	ENSGGOP00000011472	ENSGGOP00000017499	EH domain binding protein 1 like 1.	Smoothelin like 1.	0.570
ENSGGOP00000047862	ACTN2	ENSGGOP00000047862	ENSGGOP00000011629	PDZ and LIM domain 7.	Actinin alpha 2.	0.413