SUPT16H protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC73	CTR9	ENSGGOP00000031859	ENSGGOP00000011158	Cell division cycle 73.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	ENSGGOP00000033975	ENSGGOP00000031859	ENSGGOP00000033975	Cell division cycle 73.	Uncharacterized protein.	0.882
CDC73	G3RZJ6_GORGO	ENSGGOP00000031859	ENSGGOP00000021239	Cell division cycle 73.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.998
CDC73	PAF1	ENSGGOP00000031859	ENSGGOP00000042386	Cell division cycle 73.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	POLR2B	ENSGGOP00000031859	ENSGGOP00000047099	Cell division cycle 73.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.841
CDC73	POLR2C	ENSGGOP00000031859	ENSGGOP00000019156	Cell division cycle 73.	RNA polymerase II subunit C.	0.784
CDC73	SSRP1	ENSGGOP00000031859	ENSGGOP00000012068	Cell division cycle 73.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.929
CDC73	SUPT16H	ENSGGOP00000031859	ENSGGOP00000002214	Cell division cycle 73.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.882
CDC73	SUPT5H	ENSGGOP00000031859	ENSGGOP00000014081	Cell division cycle 73.	Transcription elongation factor SPT5.	0.904
CDC73	SUPT6H	ENSGGOP00000031859	ENSGGOP00000016302	Cell division cycle 73.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.875
CTR9	CDC73	ENSGGOP00000011158	ENSGGOP00000031859	CTR9 homolog, Paf1/RNA polymerase II complex component.	Cell division cycle 73.	0.999
CTR9	ENSGGOP00000033975	ENSGGOP00000011158	ENSGGOP00000033975	CTR9 homolog, Paf1/RNA polymerase II complex component.	Uncharacterized protein.	0.914
CTR9	G3RZJ6_GORGO	ENSGGOP00000011158	ENSGGOP00000021239	CTR9 homolog, Paf1/RNA polymerase II complex component.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
CTR9	PAF1	ENSGGOP00000011158	ENSGGOP00000042386	CTR9 homolog, Paf1/RNA polymerase II complex component.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
CTR9	POLR2B	ENSGGOP00000011158	ENSGGOP00000047099	CTR9 homolog, Paf1/RNA polymerase II complex component.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.719
CTR9	POLR2C	ENSGGOP00000011158	ENSGGOP00000019156	CTR9 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit C.	0.840
CTR9	SSRP1	ENSGGOP00000011158	ENSGGOP00000012068	CTR9 homolog, Paf1/RNA polymerase II complex component.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.958
CTR9	SUPT16H	ENSGGOP00000011158	ENSGGOP00000002214	CTR9 homolog, Paf1/RNA polymerase II complex component.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.914
CTR9	SUPT5H	ENSGGOP00000011158	ENSGGOP00000014081	CTR9 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT5.	0.893
CTR9	SUPT6H	ENSGGOP00000011158	ENSGGOP00000016302	CTR9 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.916