USP5 protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDCA3	ENO2	ENSGGOP00000002571	ENSGGOP00000005491	Cell division cycle associated 3.	Enolase 2.	0.900
CDCA3	GNB3	ENSGGOP00000002571	ENSGGOP00000002568	Cell division cycle associated 3.	G protein subunit beta 3.	0.941
CDCA3	MLF2	ENSGGOP00000002571	ENSGGOP00000007758	Cell division cycle associated 3.	Myeloid leukemia factor 2.	0.871
CDCA3	USP5	ENSGGOP00000002571	ENSGGOP00000002580	Cell division cycle associated 3.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.896
ENO2	CDCA3	ENSGGOP00000005491	ENSGGOP00000002571	Enolase 2.	Cell division cycle associated 3.	0.900
ENO2	GNB3	ENSGGOP00000005491	ENSGGOP00000002568	Enolase 2.	G protein subunit beta 3.	0.859
ENO2	MLF2	ENSGGOP00000005491	ENSGGOP00000007758	Enolase 2.	Myeloid leukemia factor 2.	0.770
ENO2	USP5	ENSGGOP00000005491	ENSGGOP00000002580	Enolase 2.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.856
ENSGGOP00000019740	G3SEP4_GORGO	ENSGGOP00000019740	ENSGGOP00000026578	annotation not available	Ubiquitin-like domain-containing protein.	0.900
ENSGGOP00000019740	RPS27A	ENSGGOP00000019740	ENSGGOP00000007509	annotation not available	Ubiquitin-like domain-containing protein.	0.900
ENSGGOP00000019740	UBA52	ENSGGOP00000019740	ENSGGOP00000004534	annotation not available	Ubiquitin-like domain-containing protein.	0.996
ENSGGOP00000019740	UBC	ENSGGOP00000019740	ENSGGOP00000001286	annotation not available	Polyubiquitin-C; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair [...]	0.987
ENSGGOP00000019740	USP5	ENSGGOP00000019740	ENSGGOP00000002580	annotation not available	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.856
ENSGGOP00000038520	G3SEP4_GORGO	ENSGGOP00000038520	ENSGGOP00000026578	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.901
ENSGGOP00000038520	RPS27A	ENSGGOP00000038520	ENSGGOP00000007509	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.900
ENSGGOP00000038520	UBA52	ENSGGOP00000038520	ENSGGOP00000004534	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.987
ENSGGOP00000038520	UBC	ENSGGOP00000038520	ENSGGOP00000001286	Ubiquitin-like domain-containing protein.	Polyubiquitin-C; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair [...]	0.956
ENSGGOP00000038520	USP5	ENSGGOP00000038520	ENSGGOP00000002580	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.856
G3SEP4_GORGO	ENSGGOP00000019740	ENSGGOP00000026578	ENSGGOP00000019740	Ubiquitin-like domain-containing protein.	annotation not available	0.900
G3SEP4_GORGO	ENSGGOP00000038520	ENSGGOP00000026578	ENSGGOP00000038520	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.901