SF3B4 protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	ENSGGOP00000041470	ENSGGOP00000039314	ENSGGOP00000041470	DEAD-box helicase 42.	Splicing factor 3b subunit 1.	0.998
DDX42	PHF5A	ENSGGOP00000039314	ENSGGOP00000001088	DEAD-box helicase 42.	PHD finger protein 5A.	0.992
DDX42	SF3A1	ENSGGOP00000039314	ENSGGOP00000012326	DEAD-box helicase 42.	Splicing factor 3a subunit 1.	0.966
DDX42	SF3A2	ENSGGOP00000039314	ENSGGOP00000006470	DEAD-box helicase 42.	Splicing factor 3a subunit 2.	0.979
DDX42	SF3B2	ENSGGOP00000039314	ENSGGOP00000026965	DEAD-box helicase 42.	Splicing factor 3b subunit 2.	0.993
DDX42	SF3B3	ENSGGOP00000039314	ENSGGOP00000003198	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.996
DDX42	SF3B4	ENSGGOP00000039314	ENSGGOP00000004665	DEAD-box helicase 42.	Splicing factor 3b subunit 4.	0.995
DDX42	SF3B5	ENSGGOP00000039314	ENSGGOP00000001516	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.995
DDX42	SF3B6	ENSGGOP00000039314	ENSGGOP00000030535	DEAD-box helicase 42.	Splicing factor 3b subunit 6.	0.981
DDX42	SNRPD2	ENSGGOP00000039314	ENSGGOP00000002313	DEAD-box helicase 42.	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.	0.823
ENSGGOP00000041470	DDX42	ENSGGOP00000041470	ENSGGOP00000039314	Splicing factor 3b subunit 1.	DEAD-box helicase 42.	0.998
ENSGGOP00000041470	PHF5A	ENSGGOP00000041470	ENSGGOP00000001088	Splicing factor 3b subunit 1.	PHD finger protein 5A.	0.998
ENSGGOP00000041470	SF3A1	ENSGGOP00000041470	ENSGGOP00000012326	Splicing factor 3b subunit 1.	Splicing factor 3a subunit 1.	0.998
ENSGGOP00000041470	SF3A2	ENSGGOP00000041470	ENSGGOP00000006470	Splicing factor 3b subunit 1.	Splicing factor 3a subunit 2.	0.999
ENSGGOP00000041470	SF3B2	ENSGGOP00000041470	ENSGGOP00000026965	Splicing factor 3b subunit 1.	Splicing factor 3b subunit 2.	0.999
ENSGGOP00000041470	SF3B3	ENSGGOP00000041470	ENSGGOP00000003198	Splicing factor 3b subunit 1.	Splicing factor 3b subunit 3.	0.999
ENSGGOP00000041470	SF3B4	ENSGGOP00000041470	ENSGGOP00000004665	Splicing factor 3b subunit 1.	Splicing factor 3b subunit 4.	0.998
ENSGGOP00000041470	SF3B5	ENSGGOP00000041470	ENSGGOP00000001516	Splicing factor 3b subunit 1.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
ENSGGOP00000041470	SF3B6	ENSGGOP00000041470	ENSGGOP00000030535	Splicing factor 3b subunit 1.	Splicing factor 3b subunit 6.	0.997
ENSGGOP00000041470	SNRPD2	ENSGGOP00000041470	ENSGGOP00000002313	Splicing factor 3b subunit 1.	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.	0.993