TUBE1 protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TUBE1

Tubulin epsilon 1; Belongs to the tubulin family. (475 aa)

Predicted Functional Partners:

G3QWD6_GORGO

0.813

G3R8A6_GORGO

0.784

CNTRL

0.662

ODF2

0.628

TUBA3E

0.611

G3RMA0_GORGO

0.611

G3RQF7_GORGO

0.611

TUBA3C

0.611

TUBAL3

0.611

G3SHN3_GORGO

0.611

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTRL	ODF2	ENSGGOP00000044629	ENSGGOP00000042723	Centriolin.	Outer dense fiber of sperm tails 2.	0.797
CNTRL	TUBE1	ENSGGOP00000044629	ENSGGOP00000004801	Centriolin.	Tubulin epsilon 1; Belongs to the tubulin family.	0.662
G3QWD6_GORGO	G3R8A6_GORGO	ENSGGOP00000007092	ENSGGOP00000011610	Tubulin delta 1; Belongs to the tubulin family.	Tubulin epsilon and delta complex 2.	0.504
G3QWD6_GORGO	TUBE1	ENSGGOP00000007092	ENSGGOP00000004801	Tubulin delta 1; Belongs to the tubulin family.	Tubulin epsilon 1; Belongs to the tubulin family.	0.813
G3R8A6_GORGO	G3QWD6_GORGO	ENSGGOP00000011610	ENSGGOP00000007092	Tubulin epsilon and delta complex 2.	Tubulin delta 1; Belongs to the tubulin family.	0.504
G3R8A6_GORGO	TUBE1	ENSGGOP00000011610	ENSGGOP00000004801	Tubulin epsilon and delta complex 2.	Tubulin epsilon 1; Belongs to the tubulin family.	0.784
G3RMA0_GORGO	G3RQF7_GORGO	ENSGGOP00000016914	ENSGGOP00000018030	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.893
G3RMA0_GORGO	G3SHN3_GORGO	ENSGGOP00000016914	ENSGGOP00000027623	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.965
G3RMA0_GORGO	TUBA3C	ENSGGOP00000016914	ENSGGOP00000022762	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.488
G3RMA0_GORGO	TUBA3E	ENSGGOP00000016914	ENSGGOP00000010633	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.488
G3RMA0_GORGO	TUBE1	ENSGGOP00000016914	ENSGGOP00000004801	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin epsilon 1; Belongs to the tubulin family.	0.611
G3RQF7_GORGO	G3RMA0_GORGO	ENSGGOP00000018030	ENSGGOP00000016914	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.893
G3RQF7_GORGO	TUBE1	ENSGGOP00000018030	ENSGGOP00000004801	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin epsilon 1; Belongs to the tubulin family.	0.611
G3SHN3_GORGO	G3RMA0_GORGO	ENSGGOP00000027623	ENSGGOP00000016914	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.965
G3SHN3_GORGO	TUBE1	ENSGGOP00000027623	ENSGGOP00000004801	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin epsilon 1; Belongs to the tubulin family.	0.611
ODF2	CNTRL	ENSGGOP00000042723	ENSGGOP00000044629	Outer dense fiber of sperm tails 2.	Centriolin.	0.797
ODF2	TUBE1	ENSGGOP00000042723	ENSGGOP00000004801	Outer dense fiber of sperm tails 2.	Tubulin epsilon 1; Belongs to the tubulin family.	0.628
TUBA3C	G3RMA0_GORGO	ENSGGOP00000022762	ENSGGOP00000016914	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.488
TUBA3C	TUBE1	ENSGGOP00000022762	ENSGGOP00000004801	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin epsilon 1; Belongs to the tubulin family.	0.611
TUBA3E	G3RMA0_GORGO	ENSGGOP00000010633	ENSGGOP00000016914	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.488