G3R7T7_GORGO protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3R7T7_GORGO

AT-rich interaction domain 1B. (2015 aa)

Predicted Functional Partners:

SMARCA4

0.994

G3SKL0_GORGO

0.993

SMARCC1

0.990

SMARCC2

0.987

ARID1A

0.987

SMARCA2

0.986

DPF2

0.985

SMARCE1

0.974

ENSGGOP00000048162

0.974

SMARCD1

0.970

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	DPF2	ENSGGOP00000034438	ENSGGOP00000033559	AT-rich interaction domain 1A.	Double PHD fingers 2.	0.994
ARID1A	ENSGGOP00000048162	ENSGGOP00000034438	ENSGGOP00000048162	AT-rich interaction domain 1A.	HMG box domain-containing protein.	0.978
ARID1A	G3R7T7_GORGO	ENSGGOP00000034438	ENSGGOP00000011434	AT-rich interaction domain 1A.	AT-rich interaction domain 1B.	0.987
ARID1A	G3SKL0_GORGO	ENSGGOP00000034438	ENSGGOP00000028653	AT-rich interaction domain 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.998
ARID1A	SMARCA2	ENSGGOP00000034438	ENSGGOP00000031013	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.995
ARID1A	SMARCA4	ENSGGOP00000034438	ENSGGOP00000034852	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.999
ARID1A	SMARCC1	ENSGGOP00000034438	ENSGGOP00000016357	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.995
ARID1A	SMARCC2	ENSGGOP00000034438	ENSGGOP00000021697	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ARID1A	SMARCD1	ENSGGOP00000034438	ENSGGOP00000035369	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.998
ARID1A	SMARCE1	ENSGGOP00000034438	ENSGGOP00000011516	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.990
DPF2	ARID1A	ENSGGOP00000033559	ENSGGOP00000034438	Double PHD fingers 2.	AT-rich interaction domain 1A.	0.994
DPF2	ENSGGOP00000048162	ENSGGOP00000033559	ENSGGOP00000048162	Double PHD fingers 2.	HMG box domain-containing protein.	0.940
DPF2	G3R7T7_GORGO	ENSGGOP00000033559	ENSGGOP00000011434	Double PHD fingers 2.	AT-rich interaction domain 1B.	0.985
DPF2	G3SKL0_GORGO	ENSGGOP00000033559	ENSGGOP00000028653	Double PHD fingers 2.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.992
DPF2	SMARCA2	ENSGGOP00000033559	ENSGGOP00000031013	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.945
DPF2	SMARCA4	ENSGGOP00000033559	ENSGGOP00000034852	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.978
DPF2	SMARCC1	ENSGGOP00000033559	ENSGGOP00000016357	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.976
DPF2	SMARCC2	ENSGGOP00000033559	ENSGGOP00000021697	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.988
DPF2	SMARCD1	ENSGGOP00000033559	ENSGGOP00000035369	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.991
DPF2	SMARCE1	ENSGGOP00000033559	ENSGGOP00000011516	Double PHD fingers 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.940