STOML3 protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STOML3

Stomatin like 3. (282 aa)

Predicted Functional Partners:

ASIC3

0.633

TRPV1

0.614

ENSGGOP00000050219

0.560

G3QHN5_GORGO

0.539

G3RKS3_GORGO

0.539

SPG7

0.539

AFG3L2

0.539

ENSGGOP00000034523

0.539

ENSGGOP00000036183

0.539

BBS4

0.525

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFG3L2	ENSGGOP00000034523	ENSGGOP00000030393	ENSGGOP00000034523	AFG3 like matrix AAA peptidase subunit 2.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.547
AFG3L2	SPG7	ENSGGOP00000030393	ENSGGOP00000019794	AFG3 like matrix AAA peptidase subunit 2.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.913
AFG3L2	STOML3	ENSGGOP00000030393	ENSGGOP00000011522	AFG3 like matrix AAA peptidase subunit 2.	Stomatin like 3.	0.539
ASIC3	ENSGGOP00000050219	ENSGGOP00000016463	ENSGGOP00000050219	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.530
ASIC3	STOML3	ENSGGOP00000016463	ENSGGOP00000011522	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Stomatin like 3.	0.633
ASIC3	TRPV1	ENSGGOP00000016463	ENSGGOP00000009652	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Transient receptor potential cation channel subfamily V member 1; Belongs to the transient receptor (TC 1.A.4) family.	0.683
BBS4	STOML3	ENSGGOP00000003833	ENSGGOP00000011522	Bardet-Biedl syndrome 4.	Stomatin like 3.	0.525
ENSGGOP00000034523	AFG3L2	ENSGGOP00000034523	ENSGGOP00000030393	AAA domain-containing protein; Belongs to the AAA ATPase family.	AFG3 like matrix AAA peptidase subunit 2.	0.547
ENSGGOP00000034523	SPG7	ENSGGOP00000034523	ENSGGOP00000019794	AAA domain-containing protein; Belongs to the AAA ATPase family.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.914
ENSGGOP00000034523	STOML3	ENSGGOP00000034523	ENSGGOP00000011522	AAA domain-containing protein; Belongs to the AAA ATPase family.	Stomatin like 3.	0.539
ENSGGOP00000036183	SPG7	ENSGGOP00000036183	ENSGGOP00000019794	Peptidase_M41 domain-containing protein.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.491
ENSGGOP00000036183	STOML3	ENSGGOP00000036183	ENSGGOP00000011522	Peptidase_M41 domain-containing protein.	Stomatin like 3.	0.539
ENSGGOP00000050219	ASIC3	ENSGGOP00000050219	ENSGGOP00000016463	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.530
ENSGGOP00000050219	STOML3	ENSGGOP00000050219	ENSGGOP00000011522	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Stomatin like 3.	0.560
ENSGGOP00000050219	TRPV1	ENSGGOP00000050219	ENSGGOP00000009652	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Transient receptor potential cation channel subfamily V member 1; Belongs to the transient receptor (TC 1.A.4) family.	0.483
G3QHN5_GORGO	STOML3	ENSGGOP00000001868	ENSGGOP00000011522	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone; Belongs to the AAA ATPase family.	Stomatin like 3.	0.539
G3RKS3_GORGO	STOML3	ENSGGOP00000016352	ENSGGOP00000011522	YME1 like 1 ATPase.	Stomatin like 3.	0.539
SPG7	AFG3L2	ENSGGOP00000019794	ENSGGOP00000030393	SPG7 matrix AAA peptidase subunit, paraplegin.	AFG3 like matrix AAA peptidase subunit 2.	0.913
SPG7	ENSGGOP00000034523	ENSGGOP00000019794	ENSGGOP00000034523	SPG7 matrix AAA peptidase subunit, paraplegin.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.914
SPG7	ENSGGOP00000036183	ENSGGOP00000019794	ENSGGOP00000036183	SPG7 matrix AAA peptidase subunit, paraplegin.	Peptidase_M41 domain-containing protein.	0.491