MHC-DMB protein (Gorilla gorilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3QFY0_GORGO	G3R317_GORGO	ENSGGOP00000013291	ENSGGOP00000009633	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	0.998
G3QFY0_GORGO	G3R516_GORGO	ENSGGOP00000013291	ENSGGOP00000010383	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DO alpha; Belongs to the MHC class II family.	0.985
G3QFY0_GORGO	G3R5S5_GORGO	ENSGGOP00000013291	ENSGGOP00000010658	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DO beta.	0.959
G3QFY0_GORGO	G3RCH0_GORGO	ENSGGOP00000013291	ENSGGOP00000013200	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Uncharacterized protein; Belongs to the MHC class II family.	0.990
G3QFY0_GORGO	G3RCR2_GORGO	ENSGGOP00000013291	ENSGGOP00000013296	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DP beta 1.	0.999
G3QFY0_GORGO	G3RPG3_GORGO	ENSGGOP00000013291	ENSGGOP00000017683	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DQ beta 1.	0.992
G3QFY0_GORGO	G3RV19_GORGO	ENSGGOP00000013291	ENSGGOP00000019648	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.996
G3QFY0_GORGO	G3S117_GORGO	ENSGGOP00000013291	ENSGGOP00000021762	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DR beta 5.	0.979
G3QFY0_GORGO	G3SJ91_GORGO	ENSGGOP00000013291	ENSGGOP00000028181	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DQ beta 2.	0.964
G3QFY0_GORGO	MHC-DMB	ENSGGOP00000013291	ENSGGOP00000018065	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	Ig-like domain-containing protein.	0.997
G3R317_GORGO	G3QFY0_GORGO	ENSGGOP00000009633	ENSGGOP00000013291	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DP alpha 1; Belongs to the MHC class II family.	0.998
G3R317_GORGO	G3R516_GORGO	ENSGGOP00000009633	ENSGGOP00000010383	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DO alpha; Belongs to the MHC class II family.	0.920
G3R317_GORGO	G3R5S5_GORGO	ENSGGOP00000009633	ENSGGOP00000010658	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DO beta.	0.969
G3R317_GORGO	G3RCH0_GORGO	ENSGGOP00000009633	ENSGGOP00000013200	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Uncharacterized protein; Belongs to the MHC class II family.	0.911
G3R317_GORGO	G3RCR2_GORGO	ENSGGOP00000009633	ENSGGOP00000013296	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DP beta 1.	0.996
G3R317_GORGO	G3RPG3_GORGO	ENSGGOP00000009633	ENSGGOP00000017683	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DQ beta 1.	0.993
G3R317_GORGO	G3RV19_GORGO	ENSGGOP00000009633	ENSGGOP00000019648	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Ig-like domain-containing protein; Belongs to the MHC class II family.	0.997
G3R317_GORGO	G3S117_GORGO	ENSGGOP00000009633	ENSGGOP00000021762	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DR beta 5.	0.998
G3R317_GORGO	G3SJ91_GORGO	ENSGGOP00000009633	ENSGGOP00000028181	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Major histocompatibility complex, class II, DQ beta 2.	0.970
G3R317_GORGO	MHC-DMB	ENSGGOP00000009633	ENSGGOP00000018065	Major histocompatibility complex, class II, DR alpha; Belongs to the MHC class II family.	Ig-like domain-containing protein.	0.998