LOC100979850 protein (Pan paniscus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

LOC100979850

Uncharacterized protein. (235 aa)

Predicted Functional Partners:

RTCB

0.926

DDX1

0.910

C2orf49

0.910

FAM98B

0.910

FAM98A

0.823

FAM98C

0.749

SLFNL1

0.704

LSM12

0.636

PSMB1

0.579

ZBTB8OS

0.563

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2orf49	DDX1	ENSPPAP00000011521	ENSPPAP00000008432	Chromosome 2 open reading frame 49.	DEAD-box helicase 1.	0.980
C2orf49	FAM98A	ENSPPAP00000011521	ENSPPAP00000027555	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member A.	0.819
C2orf49	FAM98B	ENSPPAP00000011521	ENSPPAP00000029457	Chromosome 2 open reading frame 49.	Uncharacterized protein.	0.989
C2orf49	FAM98C	ENSPPAP00000011521	ENSPPAP00000041501	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member C.	0.567
C2orf49	LOC100979850	ENSPPAP00000011521	ENSPPAP00000001780	Chromosome 2 open reading frame 49.	Uncharacterized protein.	0.910
C2orf49	RTCB	ENSPPAP00000011521	ENSPPAP00000010921	Chromosome 2 open reading frame 49.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.988
C2orf49	ZBTB8OS	ENSPPAP00000011521	ENSPPAP00000011271	Chromosome 2 open reading frame 49.	Zinc finger and BTB domain containing 8 opposite strand.	0.842
DDX1	C2orf49	ENSPPAP00000008432	ENSPPAP00000011521	DEAD-box helicase 1.	Chromosome 2 open reading frame 49.	0.980
DDX1	FAM98A	ENSPPAP00000008432	ENSPPAP00000027555	DEAD-box helicase 1.	Family with sequence similarity 98 member A.	0.981
DDX1	FAM98B	ENSPPAP00000008432	ENSPPAP00000029457	DEAD-box helicase 1.	Uncharacterized protein.	0.992
DDX1	FAM98C	ENSPPAP00000008432	ENSPPAP00000041501	DEAD-box helicase 1.	Family with sequence similarity 98 member C.	0.743
DDX1	LOC100979850	ENSPPAP00000008432	ENSPPAP00000001780	DEAD-box helicase 1.	Uncharacterized protein.	0.910
DDX1	RTCB	ENSPPAP00000008432	ENSPPAP00000010921	DEAD-box helicase 1.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.993
DDX1	ZBTB8OS	ENSPPAP00000008432	ENSPPAP00000011271	DEAD-box helicase 1.	Zinc finger and BTB domain containing 8 opposite strand.	0.783
FAM98A	C2orf49	ENSPPAP00000027555	ENSPPAP00000011521	Family with sequence similarity 98 member A.	Chromosome 2 open reading frame 49.	0.819
FAM98A	DDX1	ENSPPAP00000027555	ENSPPAP00000008432	Family with sequence similarity 98 member A.	DEAD-box helicase 1.	0.981
FAM98A	FAM98B	ENSPPAP00000027555	ENSPPAP00000029457	Family with sequence similarity 98 member A.	Uncharacterized protein.	0.963
FAM98A	FAM98C	ENSPPAP00000027555	ENSPPAP00000041501	Family with sequence similarity 98 member A.	Family with sequence similarity 98 member C.	0.551
FAM98A	LOC100979850	ENSPPAP00000027555	ENSPPAP00000001780	Family with sequence similarity 98 member A.	Uncharacterized protein.	0.823
FAM98A	LSM12	ENSPPAP00000027555	ENSPPAP00000023612	Family with sequence similarity 98 member A.	AD domain-containing protein.	0.695