Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RAB3DRAB3D, member RAS oncogene family. (219 aa)    
Predicted Functional Partners:
RIMS2
Uncharacterized protein.
    
 0.920
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.821
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.708
SYT1
Synaptotagmin 1.
   
 0.680
SYT2
Synaptotagmin 2.
   
 0.680
SLC18A3
Solute carrier family 18 member A3.
     
 0.659
SYTL4
Synaptotagmin like 4.
   
 0.657
RAB3IP
RAB3A interacting protein.
    
 0.655
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.641
RAB3B
RAB3B, member RAS oncogene family.
   
  0.641
Your Current Organism:
Pan paniscus
NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee
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