STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM48RNA binding motif protein 48. (377 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat containing 7.
  
 
 
 0.986
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
   0.862
PRPF8
Pre-mRNA processing factor 8.
    
   0.862
SCNM1
Sodium channel modifier 1.
    
 
 0.850
CRIPT
CXXC repeat containing interactor of PDZ3 domain.
   
 
 0.803
PPIL2
Peptidylprolyl isomerase like 2.
    
 
 0.785
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.780
SF3B3
Splicing factor 3b subunit 3.
   
 
 0.772
RNF113A
Ring finger protein 113A.
   
   0.769
DHX16
DEAH-box helicase 16.
   
 
 0.769
Your Current Organism:
Pan paniscus
NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.