OTUD7B protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP4M1	ECI2	ENSPTRP00000074350	ENSPTRP00000030198	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	Enoyl-CoA delta isomerase 2.	0.735
AP4M1	OTUD7B	ENSPTRP00000074350	ENSPTRP00000002112	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	OTU domain containing 7B.	0.757
AP4M1	RHNO1	ENSPTRP00000074350	ENSPTRP00000007761	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	RAD9-HUS1-RAD1 interacting nuclear orphan 1.	0.761
AP4M1	STRN	ENSPTRP00000074350	ENSPTRP00000010587	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	Striatin, calmodulin binding protein.	0.775
AP4M1	TTLL5	ENSPTRP00000074350	ENSPTRP00000011141	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	TTLL5 isoform 7.	0.761
ECI2	AP4M1	ENSPTRP00000030198	ENSPTRP00000074350	Enoyl-CoA delta isomerase 2.	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	0.735
ECI2	ENSPTRP00000060412	ENSPTRP00000030198	ENSPTRP00000060412	Enoyl-CoA delta isomerase 2.	annotation not available	0.630
ECI2	KXD1	ENSPTRP00000030198	ENSPTRP00000060271	Enoyl-CoA delta isomerase 2.	UBA52 isoform 10.	0.506
ECI2	OTUD7B	ENSPTRP00000030198	ENSPTRP00000002112	Enoyl-CoA delta isomerase 2.	OTU domain containing 7B.	0.789
ECI2	RHNO1	ENSPTRP00000030198	ENSPTRP00000007761	Enoyl-CoA delta isomerase 2.	RAD9-HUS1-RAD1 interacting nuclear orphan 1.	0.735
ECI2	RPS27A	ENSPTRP00000030198	ENSPTRP00000020489	Enoyl-CoA delta isomerase 2.	RPS27A isoform 1.	0.630
ECI2	STRN	ENSPTRP00000030198	ENSPTRP00000010587	Enoyl-CoA delta isomerase 2.	Striatin, calmodulin binding protein.	0.719
ECI2	TTLL5	ENSPTRP00000030198	ENSPTRP00000011141	Enoyl-CoA delta isomerase 2.	TTLL5 isoform 7.	0.735
ECI2	UBC	ENSPTRP00000030198	ENSPTRP00000050925	Enoyl-CoA delta isomerase 2.	Polyubiquitin-C; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair [...]	0.465
ENSPTRP00000060412	ECI2	ENSPTRP00000060412	ENSPTRP00000030198	annotation not available	Enoyl-CoA delta isomerase 2.	0.630
ENSPTRP00000060412	KXD1	ENSPTRP00000060412	ENSPTRP00000060271	annotation not available	UBA52 isoform 10.	0.999
ENSPTRP00000060412	OTUD7B	ENSPTRP00000060412	ENSPTRP00000002112	annotation not available	OTU domain containing 7B.	0.844
ENSPTRP00000060412	OTULIN	ENSPTRP00000060412	ENSPTRP00000028722	annotation not available	OTULIN isoform 1.	0.876
ENSPTRP00000060412	RPS27A	ENSPTRP00000060412	ENSPTRP00000020489	annotation not available	RPS27A isoform 1.	0.900
ENSPTRP00000060412	UBC	ENSPTRP00000060412	ENSPTRP00000050925	annotation not available	Polyubiquitin-C; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair [...]	0.998