STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCNM1Sodium channel modifier 1. (230 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat containing 7.
    
 
 0.882
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
    
 
 0.848
SF3B3
Splicing factor 3b, subunit 3, 130kDa.
    
   0.845
SF3B1
Splicing factor 3b, subunit 1, 155kDa.
    
 
 0.840
RNF113A
Ring finger protein 113A.
   
   0.834
PRPF8
PRP8 pre-mRNA processing factor 8 homolog.
    
   0.826
SF3B2
Splicing factor 3b, subunit 2, 145kDa.
    
   0.826
CDC5L
CDC5 cell division cycle 5-like.
    
   0.826
SF3B6
Splicing factor 3B, 14 kDa subunit.
    
   0.823
CRIPT
CXXC repeat containing interactor of PDZ3 domain.
    
 
 0.784
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.