TAF1A protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD3EAP	POLI	ENSPTRP00000019137	ENSPTRP00000017055	CD3EAP isoform 1.	POLI isoform 2.	0.424
CD3EAP	POLR1E	ENSPTRP00000019137	ENSPTRP00000081004	CD3EAP isoform 1.	RNA polymerase I subunit E.	0.999
CD3EAP	RRN3	ENSPTRP00000019137	ENSPTRP00000013308	CD3EAP isoform 1.	RRN3 homolog, RNA polymerase I transcription factor.	0.913
CD3EAP	TAF1A	ENSPTRP00000019137	ENSPTRP00000003364	CD3EAP isoform 1.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.769
CD3EAP	TAF1C	ENSPTRP00000019137	ENSPTRP00000014352	CD3EAP isoform 1.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.652
CD3EAP	TAF1D	ENSPTRP00000019137	ENSPTRP00000054254	CD3EAP isoform 1.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.556
CD3EAP	TBP	ENSPTRP00000019137	ENSPTRP00000058203	CD3EAP isoform 1.	TBP isoform 1.	0.466
CD3EAP	TBPL2	ENSPTRP00000019137	ENSPTRP00000010815	CD3EAP isoform 1.	TATA box-binding protein-like protein 2; Transcription factor required in complex with TAF3 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process (By similarity).	0.430
CD3EAP	UBTF	ENSPTRP00000019137	ENSPTRP00000075608	CD3EAP isoform 1.	Upstream binding transcription factor, RNA polymerase I.	0.704
HOOK2	POLI	ENSPTRP00000017996	ENSPTRP00000017055	Hook microtubule tethering protein 2.	POLI isoform 2.	0.458
HOOK2	TAF1A	ENSPTRP00000017996	ENSPTRP00000003364	Hook microtubule tethering protein 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.749
HOOK2	TAF1C	ENSPTRP00000017996	ENSPTRP00000014352	Hook microtubule tethering protein 2.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.743
HOOK2	TAF1D	ENSPTRP00000017996	ENSPTRP00000054254	Hook microtubule tethering protein 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.579
POLI	CD3EAP	ENSPTRP00000017055	ENSPTRP00000019137	POLI isoform 2.	CD3EAP isoform 1.	0.424
POLI	HOOK2	ENSPTRP00000017055	ENSPTRP00000017996	POLI isoform 2.	Hook microtubule tethering protein 2.	0.458
POLI	POLR1E	ENSPTRP00000017055	ENSPTRP00000081004	POLI isoform 2.	RNA polymerase I subunit E.	0.495
POLI	RRN3	ENSPTRP00000017055	ENSPTRP00000013308	POLI isoform 2.	RRN3 homolog, RNA polymerase I transcription factor.	0.724
POLI	TAF1A	ENSPTRP00000017055	ENSPTRP00000003364	POLI isoform 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.742
POLI	TAF1C	ENSPTRP00000017055	ENSPTRP00000014352	POLI isoform 2.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.582
POLI	TAF1D	ENSPTRP00000017055	ENSPTRP00000054254	POLI isoform 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.457