TUBA1C protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CK820_G0051601	ENSPTRP00000081745	ENSPTRP00000083678	ENSPTRP00000081745	TUBB3 isoform 13.	annotation not available	0.951
CK820_G0051601	LOC745637	ENSPTRP00000083678	ENSPTRP00000080339	TUBB3 isoform 13.	Tubulin beta-7 chain pseudogene.	0.867
CK820_G0051601	TUBA1A	ENSPTRP00000083678	ENSPTRP00000008374	TUBB3 isoform 13.	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.931
CK820_G0051601	TUBA1B	ENSPTRP00000083678	ENSPTRP00000065915	TUBB3 isoform 13.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.814
CK820_G0051601	TUBA1C	ENSPTRP00000083678	ENSPTRP00000071873	TUBB3 isoform 13.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.933
CK820_G0051601	TUBA4A	ENSPTRP00000083678	ENSPTRP00000022120	TUBB3 isoform 13.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.898
CK820_G0051601	TUBB	ENSPTRP00000083678	ENSPTRP00000003471	TUBB3 isoform 13.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain; Belongs to the tubulin family.	0.867
CK820_G0051601	TUBB3	ENSPTRP00000083678	ENSPTRP00000054393	TUBB3 isoform 13.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.847
ENSPTRP00000071983	ENSPTRP00000081745	ENSPTRP00000071983	ENSPTRP00000081745	annotation not available	annotation not available	0.883
ENSPTRP00000071983	LOC745637	ENSPTRP00000071983	ENSPTRP00000080339	annotation not available	Tubulin beta-7 chain pseudogene.	0.867
ENSPTRP00000071983	TUBA1A	ENSPTRP00000071983	ENSPTRP00000008374	annotation not available	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.931
ENSPTRP00000071983	TUBA1B	ENSPTRP00000071983	ENSPTRP00000065915	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.814
ENSPTRP00000071983	TUBA1C	ENSPTRP00000071983	ENSPTRP00000071873	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.933
ENSPTRP00000071983	TUBA4A	ENSPTRP00000071983	ENSPTRP00000022120	annotation not available	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.898
ENSPTRP00000071983	TUBB	ENSPTRP00000071983	ENSPTRP00000003471	annotation not available	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain; Belongs to the tubulin family.	0.867
ENSPTRP00000071983	TUBB3	ENSPTRP00000071983	ENSPTRP00000054393	annotation not available	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.847
ENSPTRP00000081745	CK820_G0051601	ENSPTRP00000081745	ENSPTRP00000083678	annotation not available	TUBB3 isoform 13.	0.951
ENSPTRP00000081745	ENSPTRP00000071983	ENSPTRP00000081745	ENSPTRP00000071983	annotation not available	annotation not available	0.883
ENSPTRP00000081745	ENSPTRP00000088253	ENSPTRP00000081745	ENSPTRP00000088253	annotation not available	annotation not available	0.948
ENSPTRP00000081745	TUBA1A	ENSPTRP00000081745	ENSPTRP00000008374	annotation not available	Detyrosinated tubulin alpha-1A chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (By similarity).	0.938