PFDN5 protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFDN5

Prefoldin subunit 5. (154 aa)

Predicted Functional Partners:

PFDN2

0.999

PFDN1

0.999

PFDN6

0.999

PFDN4

0.999

VBP1

0.994

VBP1-2

0.994

ENSPTRP00000088042

0.987

ENSPTRP00000083011

0.943

CCT2

0.915

CCT7

0.912

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT2	CCT7	ENSPTRP00000076372	ENSPTRP00000020696	Chaperonin containing TCP1, subunit 2 (Beta).	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT2	ENSPTRP00000083011	ENSPTRP00000076372	ENSPTRP00000083011	Chaperonin containing TCP1, subunit 2 (Beta).	annotation not available	0.598
CCT2	ENSPTRP00000088042	ENSPTRP00000076372	ENSPTRP00000088042	Chaperonin containing TCP1, subunit 2 (Beta).	annotation not available	0.864
CCT2	PFDN1	ENSPTRP00000076372	ENSPTRP00000029594	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 1.	0.900
CCT2	PFDN2	ENSPTRP00000076372	ENSPTRP00000002631	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 2.	0.902
CCT2	PFDN4	ENSPTRP00000076372	ENSPTRP00000086556	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.877
CCT2	PFDN5	ENSPTRP00000076372	ENSPTRP00000008528	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 5.	0.915
CCT2	PFDN6	ENSPTRP00000076372	ENSPTRP00000030812	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 6.	0.861
CCT2	VBP1	ENSPTRP00000076372	ENSPTRP00000038725	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.875
CCT2	VBP1-2	ENSPTRP00000076372	ENSPTRP00000074899	Chaperonin containing TCP1, subunit 2 (Beta).	Prefoldin subunit 3.	0.875
CCT7	CCT2	ENSPTRP00000020696	ENSPTRP00000076372	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Chaperonin containing TCP1, subunit 2 (Beta).	0.999
CCT7	ENSPTRP00000083011	ENSPTRP00000020696	ENSPTRP00000083011	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	annotation not available	0.679
CCT7	ENSPTRP00000088042	ENSPTRP00000020696	ENSPTRP00000088042	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	annotation not available	0.857
CCT7	PFDN1	ENSPTRP00000020696	ENSPTRP00000029594	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 1.	0.889
CCT7	PFDN2	ENSPTRP00000020696	ENSPTRP00000002631	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 2.	0.912
CCT7	PFDN4	ENSPTRP00000020696	ENSPTRP00000086556	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.891
CCT7	PFDN5	ENSPTRP00000020696	ENSPTRP00000008528	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 5.	0.912
CCT7	PFDN6	ENSPTRP00000020696	ENSPTRP00000030812	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 6.	0.854
CCT7	VBP1	ENSPTRP00000020696	ENSPTRP00000038725	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.848
CCT7	VBP1-2	ENSPTRP00000020696	ENSPTRP00000074899	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 3.	0.848