TAF1C protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOOK1	HOOK2	ENSPTRP00000001371	ENSPTRP00000017996	Hook microtubule tethering protein 1.	Hook microtubule tethering protein 2.	0.411
HOOK1	PRTFDC1	ENSPTRP00000001371	ENSPTRP00000087412	Hook microtubule tethering protein 1.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.794
HOOK1	TAF1A	ENSPTRP00000001371	ENSPTRP00000003364	Hook microtubule tethering protein 1.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.731
HOOK1	TAF1C	ENSPTRP00000001371	ENSPTRP00000014352	Hook microtubule tethering protein 1.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.722
HOOK1	TAF1D	ENSPTRP00000001371	ENSPTRP00000054254	Hook microtubule tethering protein 1.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.596
HOOK2	HOOK1	ENSPTRP00000017996	ENSPTRP00000001371	Hook microtubule tethering protein 2.	Hook microtubule tethering protein 1.	0.411
HOOK2	PRTFDC1	ENSPTRP00000017996	ENSPTRP00000087412	Hook microtubule tethering protein 2.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.841
HOOK2	TAF1A	ENSPTRP00000017996	ENSPTRP00000003364	Hook microtubule tethering protein 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.749
HOOK2	TAF1C	ENSPTRP00000017996	ENSPTRP00000014352	Hook microtubule tethering protein 2.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.743
HOOK2	TAF1D	ENSPTRP00000017996	ENSPTRP00000054254	Hook microtubule tethering protein 2.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.579
POLR1E	RRN3	ENSPTRP00000081004	ENSPTRP00000013308	RNA polymerase I subunit E.	RRN3 homolog, RNA polymerase I transcription factor.	0.966
POLR1E	TAF1A	ENSPTRP00000081004	ENSPTRP00000003364	RNA polymerase I subunit E.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.784
POLR1E	TAF1C	ENSPTRP00000081004	ENSPTRP00000014352	RNA polymerase I subunit E.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.730
POLR1E	TAF1D	ENSPTRP00000081004	ENSPTRP00000054254	RNA polymerase I subunit E.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa.	0.633
POLR1E	TBP	ENSPTRP00000081004	ENSPTRP00000058203	RNA polymerase I subunit E.	TBP isoform 1.	0.565
POLR1E	TBPL2	ENSPTRP00000081004	ENSPTRP00000010815	RNA polymerase I subunit E.	TATA box-binding protein-like protein 2; Transcription factor required in complex with TAF3 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process (By similarity).	0.565
POLR1E	UBTF	ENSPTRP00000081004	ENSPTRP00000075608	RNA polymerase I subunit E.	Upstream binding transcription factor, RNA polymerase I.	0.919
PRTFDC1	HOOK1	ENSPTRP00000087412	ENSPTRP00000001371	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	Hook microtubule tethering protein 1.	0.794
PRTFDC1	HOOK2	ENSPTRP00000087412	ENSPTRP00000017996	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	Hook microtubule tethering protein 2.	0.841
PRTFDC1	TAF1A	ENSPTRP00000087412	ENSPTRP00000003364	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa.	0.731