STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHM1Pleckstrin homology domain containing, family M (With RUN domain) member 1. (1061 aa)    
Predicted Functional Partners:
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
    
 
 0.883
OSTM1
Osteoclastogenesis associated transmembrane protein 1.
      
 0.849
CLCN7
Chloride channel protein.
      
 0.847
TCIRG1
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
   
  
 0.820
GABARAP
GABA type A receptor-associated protein.
    
 
 0.738
ARL8B
ADP ribosylation factor like GTPase 8B; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.731
ENSPTRP00000085944
annotation not available
    
 
 0.731
GABARAPL2
GABA type A receptor associated protein like 2.
    
 
 0.709
IGSF23
Immunoglobulin superfamily member 23.
      
 0.697
SNAP29
Synaptosomal-associated protein, 29kDa.
      
 0.668
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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