DUS3L protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DUS3L	ENSPTRP00000035390	ENSPTRP00000017602	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	0.829
BOP1	FTSJ3	ENSPTRP00000035390	ENSPTRP00000016175	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.997
BOP1	GNL2	ENSPTRP00000035390	ENSPTRP00000000969	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.982
BOP1	METTL1	ENSPTRP00000035390	ENSPTRP00000008761	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.722
BOP1	NOP14	ENSPTRP00000035390	ENSPTRP00000027308	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP14 nucleolar protein homolog.	0.948
BOP1	NSUN6	ENSPTRP00000035390	ENSPTRP00000003969	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP2/Sun domain family, member 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.958
BOP1	PUS1	ENSPTRP00000035390	ENSPTRP00000009598	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pseudouridine synthase 1.	0.762
BOP1	TRMT2A	ENSPTRP00000035390	ENSPTRP00000024244	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	TRM2 tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.811
BOP1	TRMT61A	ENSPTRP00000035390	ENSPTRP00000011530	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.851
DUS3L	BOP1	ENSPTRP00000017602	ENSPTRP00000035390	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.829
DUS3L	FTSJ3	ENSPTRP00000017602	ENSPTRP00000016175	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.713
DUS3L	GNL2	ENSPTRP00000017602	ENSPTRP00000000969	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.657
DUS3L	METTL1	ENSPTRP00000017602	ENSPTRP00000008761	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.700
DUS3L	NOP14	ENSPTRP00000017602	ENSPTRP00000027308	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	NOP14 nucleolar protein homolog.	0.813
DUS3L	NSUN6	ENSPTRP00000017602	ENSPTRP00000003969	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	NOP2/Sun domain family, member 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.711
DUS3L	PUS1	ENSPTRP00000017602	ENSPTRP00000009598	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	Pseudouridine synthase 1.	0.826
DUS3L	SARS1	ENSPTRP00000017602	ENSPTRP00000090714	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	SARS isoform 2.	0.674
DUS3L	TRMT2A	ENSPTRP00000017602	ENSPTRP00000024244	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	TRM2 tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.708
DUS3L	TRMT61A	ENSPTRP00000017602	ENSPTRP00000011530	TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.718
FTSJ3	BOP1	ENSPTRP00000016175	ENSPTRP00000035390	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.997