STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX1DEAD (Asp-Glu-Ala-Asp) box polypeptide 1. (740 aa)    
Predicted Functional Partners:
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.997
FAM98B
FAM98B isoform 1.
   
 0.996
C2AH2orf49
Chromosome 2 open reading frame 49.
    
 0.985
RTRAF
RNA transcription, translation and transport factor.
   
 0.979
ENSPTRP00000080012
annotation not available
   
 0.979
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.955
FAM98A
Family with sequence similarity 98, member A.
   
 0.954
DHX36
DEAH-box helicase 36.
   
 0.953
DDX21
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21.
   
 
0.905
FAM49A
FAM49A isoform 1.
      
 0.835
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.