| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DNMBP | RRS1 | ENSPTRP00000082219 | ENSPTRP00000053146 | Dynamin binding protein. | Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. | 0.933 |
| DNMBP | SIX3 | ENSPTRP00000082219 | ENSPTRP00000020406 | Dynamin binding protein. | SIX homeobox 3. | 0.751 |
| DNMBP | SIX6 | ENSPTRP00000082219 | ENSPTRP00000010877 | Dynamin binding protein. | SIX homeobox 6. | 0.451 |
| EYA1 | SIX3 | ENSPTRP00000034805 | ENSPTRP00000020406 | Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. | SIX homeobox 3. | 0.676 |
| EYA1 | SIX6 | ENSPTRP00000034805 | ENSPTRP00000010877 | Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. | SIX homeobox 6. | 0.542 |
| NR4A3 | SIX3 | ENSPTRP00000084014 | ENSPTRP00000020406 | Nuclear receptor subfamily 4 group A member 3. | SIX homeobox 3. | 0.774 |
| NR4A3 | SIX6 | ENSPTRP00000084014 | ENSPTRP00000010877 | Nuclear receptor subfamily 4 group A member 3. | SIX homeobox 6. | 0.600 |
| OTX2 | PAX6 | ENSPTRP00000010823 | ENSPTRP00000065705 | Orthodenticle homeobox 2. | PAX6 isoform 13. | 0.583 |
| OTX2 | SHH | ENSPTRP00000010823 | ENSPTRP00000075730 | Orthodenticle homeobox 2. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.601 |
| OTX2 | SIX3 | ENSPTRP00000010823 | ENSPTRP00000020406 | Orthodenticle homeobox 2. | SIX homeobox 3. | 0.706 |
| OTX2 | SIX6 | ENSPTRP00000010823 | ENSPTRP00000010877 | Orthodenticle homeobox 2. | SIX homeobox 6. | 0.664 |
| OTX2 | ZIC2 | ENSPTRP00000010823 | ENSPTRP00000010200 | Orthodenticle homeobox 2. | ZIC2 isoform 1. | 0.483 |
| PAX6 | OTX2 | ENSPTRP00000065705 | ENSPTRP00000010823 | PAX6 isoform 13. | Orthodenticle homeobox 2. | 0.583 |
| PAX6 | SHH | ENSPTRP00000065705 | ENSPTRP00000075730 | PAX6 isoform 13. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.651 |
| PAX6 | SIX3 | ENSPTRP00000065705 | ENSPTRP00000020406 | PAX6 isoform 13. | SIX homeobox 3. | 0.780 |
| PAX6 | SIX6 | ENSPTRP00000065705 | ENSPTRP00000010877 | PAX6 isoform 13. | SIX homeobox 6. | 0.649 |
| RRS1 | DNMBP | ENSPTRP00000053146 | ENSPTRP00000082219 | Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. | Dynamin binding protein. | 0.933 |
| RRS1 | SIX3 | ENSPTRP00000053146 | ENSPTRP00000020406 | Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. | SIX homeobox 3. | 0.791 |
| RRS1 | SIX6 | ENSPTRP00000053146 | ENSPTRP00000010877 | Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. | SIX homeobox 6. | 0.444 |
| SHH | OTX2 | ENSPTRP00000075730 | ENSPTRP00000010823 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Orthodenticle homeobox 2. | 0.601 |
