NCL protein (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF3A	ENSPTRP00000088928	ENSPTRP00000005269	ENSPTRP00000088928	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	annotation not available	0.613
EIF3A	LOC737860	ENSPTRP00000005269	ENSPTRP00000073609	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Plasminogen activator inhibitor 1 RNA-binding protein pseudogene.	0.613
EIF3A	NCL	ENSPTRP00000005269	ENSPTRP00000022272	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	NCL isoform 2.	0.892
EIF3A	SERBP1	ENSPTRP00000005269	ENSPTRP00000041223	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	SERPINE1 mRNA binding protein 1.	0.613
ENSPTRP00000087196	ENSPTRP00000088928	ENSPTRP00000087196	ENSPTRP00000088928	annotation not available	annotation not available	0.579
ENSPTRP00000087196	HNRNPA2B1	ENSPTRP00000087196	ENSPTRP00000032472	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.653
ENSPTRP00000087196	HNRNPU	ENSPTRP00000087196	ENSPTRP00000084872	annotation not available	Heterogeneous nuclear ribonucleoprotein U (Scaffold attachment factor A).	0.696
ENSPTRP00000087196	LOC737860	ENSPTRP00000087196	ENSPTRP00000073609	annotation not available	Plasminogen activator inhibitor 1 RNA-binding protein pseudogene.	0.579
ENSPTRP00000087196	NCL	ENSPTRP00000087196	ENSPTRP00000022272	annotation not available	NCL isoform 2.	0.900
ENSPTRP00000087196	SERBP1	ENSPTRP00000087196	ENSPTRP00000041223	annotation not available	SERPINE1 mRNA binding protein 1.	0.579
ENSPTRP00000088520	ENSPTRP00000088928	ENSPTRP00000088520	ENSPTRP00000088928	annotation not available	annotation not available	0.579
ENSPTRP00000088520	HNRNPA2B1	ENSPTRP00000088520	ENSPTRP00000032472	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.653
ENSPTRP00000088520	HNRNPU	ENSPTRP00000088520	ENSPTRP00000084872	annotation not available	Heterogeneous nuclear ribonucleoprotein U (Scaffold attachment factor A).	0.696
ENSPTRP00000088520	LOC737860	ENSPTRP00000088520	ENSPTRP00000073609	annotation not available	Plasminogen activator inhibitor 1 RNA-binding protein pseudogene.	0.579
ENSPTRP00000088520	NCL	ENSPTRP00000088520	ENSPTRP00000022272	annotation not available	NCL isoform 2.	0.900
ENSPTRP00000088520	SERBP1	ENSPTRP00000088520	ENSPTRP00000041223	annotation not available	SERPINE1 mRNA binding protein 1.	0.579
ENSPTRP00000088928	EIF3A	ENSPTRP00000088928	ENSPTRP00000005269	annotation not available	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	0.613
ENSPTRP00000088928	ENSPTRP00000087196	ENSPTRP00000088928	ENSPTRP00000087196	annotation not available	annotation not available	0.579
ENSPTRP00000088928	ENSPTRP00000088520	ENSPTRP00000088928	ENSPTRP00000088520	annotation not available	annotation not available	0.579
ENSPTRP00000088928	HNRNPA2B1	ENSPTRP00000088928	ENSPTRP00000032472	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.469