STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4BCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (393 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.997
GABARAP
GABA type A receptor-associated protein.
   
 0.996
LOC467760
Gamma-aminobutyric acid receptor-associated protein-like 3.
   
 0.982
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.982
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.973
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.964
ENSPTRP00000088677
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.946
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
   
 0.911
ATG3
Autophagy-related protein 3.
   
 
 0.891
ENSPTRP00000089676
annotation not available
   
 
 0.851
Your Current Organism:
Pan troglodytes
NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.